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Neural Computation

MIT Press

Preprints posted in the last 90 days, ranked by how well they match Neural Computation's content profile, based on 36 papers previously published here. The average preprint has a 0.03% match score for this journal, so anything above that is already an above-average fit.

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A novel framework for expanding RNNs with biophysical detail to solve cognitive tasks

Tolley, N.; Jones, S.

2026-03-17 neuroscience 10.64898/2026.03.13.711746 medRxiv
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Recurrent neural networks (RNNs) have proven to be highly successful in emulating human-like cognitive functions such as working memory. In recent years, RNNs are evolving to incorporate more biophysical realism to produce more plausible predictions on how cognitive tasks are solved in real neural circuits. However, there are major challenges in constructing and training networks with the complex and nonlinear properties of real neurons. A major component of the success of RNNs is that they share the same mathematical base as deep neural networks, permitting highly efficient optimization of model parameters using standard deep learning techniques. To do so, they use abstract representations of neurons which fail to capture the impact of cell-level biophysical and morphologic properties that may benefit network-level function. Expanding task-trained RNNs with biophysical properties such as dendrites and active ionic currents poses substantial challenges, as it moves these models away from the validated training regimes known to be highly effective for RNNs. To address this gap, we developed a biophysically detailed reservoir computing (BRC) framework with the goal of extracting mechanistic insights from biophysical neural models, and propose that these insights can be used to guide model choices that will work for specific categories of cognitive tasks. The BRC network was constructed with synaptically coupled excitatory and inhibitory cells, in which the excitatory cells include multicompartment biophysically active dendrites; motivated by empirical studies suggesting dendrites have desirable computational benefits (e.g. pattern classification and coincidence detection). We trained the BRC network to do a simplified working memory task where it had to maintain the representation of an extrinsic "cue" input. We studied the impact of extrinsic input time constants (fast AMPA vs slow NMDA) and location (dendrite vs soma) on the ability of a network to solve the task. Our results revealed that cue inputs through NMDA receptors are particularly efficient for solving the working memory task. Further, the properties of NMDA receptors are uniquely suited for cue inputs delivered at the dendrite, as networks trained with dendritic AMPA cue inputs failed to solve the task. Detailed examination of the cell and network dynamics that solve the task reveals distinct local network configurations and computing principles for the different types of extrinsic input. Overall, much like the body of mechanistic insights that have underpinned the success of training RNNs, this study lays the groundwork for applying the BRC framework to train biophysically detailed neural models to solve complex human-like cognitive tasks.

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Equilibrium Propagation with Predictive Learning in Leaky Integrate-and-Fire Spiking Neural Networks

Kubo, Y.

2026-05-21 neuroscience 10.64898/2026.05.19.726261 medRxiv
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Equilibrium propagation (EP) is a biologically plausible alternative to backpropagation that has demonstrated competitive performance across a range of machine learning tasks. Recent work has extended EP to spiking neural networks (SNNs), leveraging leaky integrate-and-fire (LIF) neurons and spike-based plasticity rules to improve biological realism while maintaining strong performance. In this work, we propose an EP-based SNN framework that combines LIF neural dynamics with a predictive learning rule, replacing conventional spike-timing-dependent plasticity (STDP) with a learning rule more directly aligned with predictive coding principles. We evaluate the proposed model on multiple image classification benchmarks, including MNIST, KMNIST, and Fashion-MNIST, and compare its performance with a BP-trained LIF SNN baseline. Our results show that the proposed EP-based LIF model (EP+LIF) achieves competitive accuracy across datasets, with performance approaching that of the BP-trained counterpart (BP+LIF) while relying on a biologically motivated local learning rule. In addition, analysis of hidden-layer spiking activity reveals that EP+LIF produces more persistent hidden-state activity, whereas BP+LIF yields sparser spiking representations. These results demonstrate that predictive learning can support effective EP-based training in LIF spiking networks, while also highlighting differences in activity patterns that motivate future work on activity regulation and sparse spiking dynamics.

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Toward defining loss functions in neuroscience: an XOR-based neuronal mechanism

Pena Fernandez, M.; Lloret Iglesias, L.; Marco de Lucas, J.

2026-03-17 neuroscience 10.64898/2026.03.16.712061 medRxiv
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AO_SCPLOWBSTRACTC_SCPLOWOne of the most compelling ideas for bridging neuroscience and artificial neural networks is the establishment of a framework based on three main components: network architecture, optimization mechanism, and loss (or objective) function to be minimized. While the first two components have been extensively explored, the definition of a loss or objective function in neuroscience has been addressed less thoroughly, often from perspectives such as predictive coding. In this work, we propose an elementary loss function grounded in the comparison of neuronal responses to two signals: an external one, used for learning, and an internal one, reflecting the acquired knowledge. The loss function is thus simply the basic difference between the two, which, in terms of logical signals, corresponds to a well-known non-linearly separable function: the XOR function. We illustrate with a computational example how a binarized image recognition algorithm can be straightforwardly implemented in an autoencoder, and we show how a neuronal motif organized around an inhibitory neuron could implement such XOR operation and provide a feedback signal that makes optimization possible.

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Mistake gating leads to energy and memory efficient continual learning

Pache, A.; van Rossum, M. C. W.

2026-04-20 neuroscience 10.64898/2026.04.16.718919 medRxiv
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Synaptic plasticity is metabolically expensive, yet animals continuously update their internal models without exhausting energy reserves. However, when artificial neural networks are trained, the network parameters are typically updated on every sample that is presented, even if the sample was classified correctly. Inspired by the human negativity bias and error-related negativity, we propose memorized mistake-gated learning--a biologically plausible plasticity rule where synaptic updates are strictly gated by current and past classification errors. This reduces the number of updates the network needs to make by 50% [~] 80%. Mistake gating is particularly well suited in two cases: 1) For incremental learning where new knowledge is acquired on a background of pre-existing knowledge, 2) For online learning scenarios when data needs to be stored for later replay, as mistake-gating reduces storage buffer requirements. The algorithm can be implemented in a few lines of code, adds no hyper-parameters, and comes at negligible computational overhead. Learning on mistakes is an energy efficient and biologically relevant modification to commonly used learning rules that is well suited for continual learning.

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Local gated-Hebbian learning of deep cerebellar networks with quadratic classification capacity

Hiratani, N.

2026-04-20 neuroscience 10.64898/2026.04.17.718957 medRxiv
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A central goal of neuroscience is to understand how neural circuit architecture supports learning. While recent work has clarified the computational role of depth in sensory cortical hierarchies, it remains unclear why predominantly feedforward, non-convolutional circuits such as the cerebellum and olfactory system also contain multiple processing layers. Theoretical work in deep learning has shown that two-hidden-layer networks can achieve classification capacity that scales quadratically with the number of intermediate neurons, but these results rely on nonlocal synaptic optimization and are therefore difficult to reconcile with biological learning rules. Here, we show analytically and numerically that a two-hidden-layer network with feedforward gating can achieve quadratic capacity using local three-factor Hebbian learning when intermediate activity is sparse. This architecture supports efficient one-shot learning and, in settings where backpropagation requires many repeated weight updates, offers an advantage in learning speed. Beyond random perceptron tasks, the model also performs well on structured cerebellum-related tasks, including reinforcement-learning-based motor control. Mapping the model onto cerebellar microcircuitry further suggests functional roles for dendritic compartmentalization, branch-specific inhibition, and disinhibitory interneuron pathways. Together, these results extend the Marr-Albus-Ito framework by showing how the presence of multiple intermediate layers in cerebellum-like circuits can support fast, local, and high-capacity learning.

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Spacing effect improves generalization in biological and artificial systems

Sun, G.; Huang, N.; Yan, H.; Zhou, J.; Li, Q.; Lei, B.; Zhong, Y.; Wang, L.

2026-03-23 neuroscience 10.64898/2025.12.18.695340 medRxiv
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Generalization is a fundamental criterion for evaluating learning effectiveness, a domain where biological intelligence excels yet artificial intelligence continues to face challenges. In biological learning and memory, the well-documented spacing effect shows that appropriately spaced intervals between learning trials can significantly improve behavioral performance. While multiple theories have been proposed to explain its underlying mechanisms, one compelling hypothesis is that spaced training promotes integration of input and innate variations, thereby enhancing generalization to novel but related scenarios. Here we examine this hypothesis by introducing a bio-inspired spacing effect into artificial neural networks, integrating input and innate variations across spaced intervals at the neuronal, synaptic, and network levels. These spaced ensemble strategies yield significant performance gains across various benchmark datasets and network architectures. Biological experiments on Drosophila further validate the complementary effect of appropriate variations and spaced intervals in improving generalization, which together reveal a convergent computational principle shared by biological learning and machine learning.

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Evolution imposes an inductive bias that alters and accelerates learning dynamics

Midler, B.; Pan-Vazquez, A.

2026-05-07 neuroscience 10.64898/2026.05.04.722746 medRxiv
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The learning dynamics of biological brains and artificial neural networks are of interest to both neuroscience and machine learning. A key difference between them is that neural networks are often trained from a randomly initialized state whereas each brain is the product of generations of evolutionary optimization, yielding innate structures that enable few-shot learning and inbuilt reflexes. Artificial neural networks, by contrast, require non-ethological quantities of training data to attain comparable performance. To investigate the effect of evolutionary optimization on the learning dynamics of neural networks, we combined algorithms simulating natural selection and online learning to produce a method for evolutionarily conditioning artificial neural networks, and applied it to both reinforcement and supervised learning contexts. We found the evolutionary conditioning algorithm, by itself, performs comparably to an unoptimized baseline. However, evolutionarily conditioned networks show signs of unique and latent learning dynamics, and can be rapidly fine-tuned to optimal performance. These results suggest evolution constitutes an inductive bias that tunes neural systems to enable rapid learning.

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A Closer-to-Brain Heterosynaptic Learning Rule for Spatiotemporal Spike Pattern Detection with Low-Resolution Synapse

Furuichi, S.; Kohno, T.

2026-04-22 neuroscience 10.64898/2026.04.19.719429 medRxiv
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The brain is believed to process information efficiently in a different manner from deep learning-based artificial intelligence (AI). Brain-like next-generation AI is gaining attention owing to its potential to perform human-like, highly adaptive, robust, and power-efficient computation. To realize such AI, one crucial approach is the bottom-up implementation of the neuronal systems, capturing their electrophysiological characteristics in electronic circuits. However, this neuromorphic approach generally focuses on simplified neuronal models that do not refer to many biological findings. Developing closer-to-brain models is a natural direction that serve as a fundamental computing model for next-generation AI. One of the constraints of neuromorphic circuits is the bit resolution of synaptic efficacy memory, as the memory footprint scales with it precision. Although low-resolution synaptic efficacy is essential for minimizing memory circuit footprint and energy consumption, it generally leads to performance degradation in many tasks such as the spatio-temporal spike pattern detection. This study proposed a closer-to-brain learning rule that incorporates heterosynaptic plasticity (HP) induced by glutamate spillover. It is demonstrated that our model mitigates the performance degradation associated with low-bit resolution synaptic efficacy, achieving the pattern detection success rate with 3-bit resolution synaptic efficacy, which is comparable to 64-bit floating-point precision. Furthermore, the findings of the study indicate that HP based model accelerates the convergence of the synaptic effcacy and effectively potentiates the synapses relevant to the pattern detection while suppressing irrelevant ones, thereby promoting a bimodal distribution of synaptic efficacies. These findings may provide a basic framework for constructing an energy-efficient, brain-like next-generation AI that maintains high performance under hardware constraints.

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A brain-inspired framework for memory prioritization in neural networks based on valence

Zbaranska, S.; Rajeev, A.; Josselyn, S.; Laschowski, B.

2026-05-08 neuroscience 10.64898/2026.05.05.723022 medRxiv
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Improving long-term memory in artificial neural networks remains an open challenge. To address this, we developed a novel brain-inspired framework for memory prioritization based on the principle of emotional valence. Our framework includes: (i) a valence-weighted cross-entropy loss that scales the learning signal by the valence magnitude, analogous to neuromodulation; (ii) an amygdala-inspired module that learns high-dimensional valence embeddings; and (iii) a hippocampus-inspired module that integrates valence embeddings into the attention mechanism to modulate information retrieval. We demonstrated the generalization of our framework across spatial, episodic, and language-based memory tasks, consistently improving memory prioritization and long-term retention of high-salience information. In addition to improving long-term memory, we also showed that our framework can help mitigate the "lost-in-the-middle" problem in language modeling. More generally, this research provides further evidence of the potential of brain-inspired algorithms to advance the field of machine learning.

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Aligned recordings of neural spiking activity and licking behavior in thirsty mice

Xu, Z.; Hong, B.; Li, L.; Xie, T.; Chen, Z.; Yao, H.; Zhang, T.

2026-04-23 neuroscience 10.64898/2026.04.21.720009 medRxiv
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Electrophysiological data, which serve as a biological signal that bridges neural activity and behavioral tasks, provide an innovative approach to neuroscience research. In this study, we constructed a dataset that contains over 2000 neurons across 117 days recorded in 20 mice containing 28,573 trials. Data for 5 mice were collected from the Secondary Motor Cortex (M2) region 8 mice was derived from the Ventrolateral Striatum (VLS) and 7 mice were from Substantia Nigra pars Reticulata (SNR). We induced licking behavior in head-fixed mice by periodically delivering water through a spout while simultaneously recording spiking activity from three brain regions and behavior related electrical signals. This dataset ensures precise temporal alignment between neural activity and behavioral events, offering a robust foundation for investigating neural encoding mechanisms and simulation of neural activities. This dataset establishes a precise spike-to-event mapping, which enables high decoding accuracy using Multilayer Perceptron (MLP) and Support Vector Machine (SVM). It can serve as a high-quality benchmark for developing encoding and decoding algorithms in neural networks, particularly Spiking Neural Networks (SNNs).

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From Resonance to Computation:A Six-Layer Framework for Analog Neural Processing in Coupled RLC Oscillator Networks

SENDER, J. M.

2026-04-13 neuroscience 10.64898/2026.04.09.717435 medRxiv
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Subthreshold neuronal membranes exhibit resonant, band-pass impedance characterised by an effective inductance arising from voltage-gated channel kinetics--principally Ih. This paper presents a six-layer computational framework that builds from this single-neuron RLC description to a complete account of how coupled neural oscillator networks compute. Layer 1 establishes the RLC neuron as a frequency-selective bandpass filter. Layer 2 shows that coupled RLC neurons encode relational information in phase differences (binding). Layer 3 demonstrates that networks of coupled oscillators form attractor landscapes supporting memory and pattern completion, with fixed-point, limit-cycle, and chaotic attractor classes. Layer 4 identifies the synaptic coupling matrix as a learned impedance network whose topology determines attractor geometry. Layer 5 maps neuromodulatory systems to bias controls that sweep RLC parameters (resonant frequency, quality factor, gain) without modifying stored memories. Layer 6 assembles the full system with cross-frequency multiplexing and homeostatic stabilisation. The framework is grounded in measurable electrical quantities and generates testable predictions distinguishing it from rate-coding and RC integrate-and-fire models. We explicitly address the linearisation gap between the subthreshold regime where the RLC description is rigorous and the nonlinear regime where attractor dynamics operate, the noise and precision limits of analog neural computation ([~] 3.3 effective bits per neuron, compensated by massive parallelism), and the distinction between causal and correlative evidence for oscillation-based coding claims. The framework does not replace existing models; it extends them by showing that rate coding is one (coarse) description of the output of an analog computation whose richer dynamics-- resonance, phase, temporal fine structure--may carry additional computational content.

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Automated derivation of mean field models from spiking neural networks for the simulation of brain dynamics

Lorenzi, R. M.; De Grazia, M.; Gandini Wheeler-Kingshott, C. A. M.; Palesi, F.; D'Angelo, E. U.; Casellato, C.

2026-03-20 neuroscience 10.64898/2026.03.18.712631 medRxiv
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A mean field model (MFM) is a mesoscopic description of neuronal population dynamics that can reduce the complexity of neural microcircuits into equations preserving key functional properties. The generation of a MFM is a complex mathematical process that starts with the incorporation of single neuron input/output relationships and local connectivity. Once neuron electroresponsiveness and synaptic properties are defined, in principle, the process can be automatized. Here we develop a tool for automatic MFM derivation from biophysically grounded spiking networks (Auto-MFM) by performing micro-to-mesoscale parameter remapping, estimating input/output relationships specific for different neuronal populations (i.e., transfer functions), and optimizing transfer function parameters. Auto-MFM was tested using a spiking cerebellar circuit as a generative model. The cerebellar MFM derived with Auto-MFM accurately reproduced cerebellar population dynamics of the corresponding spiking network, matching mean and time-varying firing rates across a wide range of stimulation patterns. Auto-MFM allowed us to model and explore physiological and pathological circuit variants; indeed, it was used to map ataxia-related structural connectivity alterations of the cerebellar network, in which Purkinje cells with simplified dendritic structure altered the cerebellar connectivity. Furthermore, Auto-MFM was used to create a library of cerebellar MFMs by sweeping the level of the excitatory conductance at mossy fiber - granule cell synapse, which is altered in several neuropathologies. Auto-MFM is thus proving a flexible and powerful tool to generate region-specific MFMs of healthy and pathological brain networks to be embedded in brain digital models.

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Convolutional Neural Networks and Neuroscience: A Tutorial Introduction for The Rest of Us

De Matola, M.; Arcara, G.

2026-03-11 neuroscience 10.64898/2026.03.09.710521 medRxiv
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Convolutional neural networks (CNNs) are a class of artificial neural networks (ANNs). Since the early 2010s, they have been widely adopted as models of primate vision and classifiers of neuroimaging data, becoming relevant for a wealth of neuroscientific fields. However, the majority of neuroscience researchers come from soft-science backgrounds (like medicine, biology, or psychology) and do not have enough quantitative skills to understand the inner workings of A/CNNs. To avoid undesirable black boxes, neuroscientists should acquire some rudiments of computational neuroscience and machine learning. However, most researchers do not have the time nor the resources to make big learning investments, and self-study materials are hardly tailored to people with little mathematical background. This paper aims to fill this gap by providing a concise but accurate introduction to CNNs and their use in neuroscience -- using the minimum required mathematics, neuroscientific analogies, and Python code examples. A companion Jupyter Notebook guides readers through code examples, translating theory into practice and providing visual outputs. The paper is organised in three sections: The Concepts, The Implementation, and The Biological Plausibility of A/CNNs. The three sections are largely independent, so readers can either go through the entire paper or select a section of interest.

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Polysynaptic signal propagation in networked neural masses

Madan Mohan, V.; Roberts, J. A.; Pathak, A.; Harris, A. M.; Seguin, C.; Zalesky, A.

2026-05-04 neuroscience 10.64898/2026.04.29.721638 medRxiv
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The routing of information across the brains structural network is central to its wide range of functional capabilities. However, the mechanisms underlying information routing in complex brain networks, particularly between regions that do not share a direct anatomical connection, remain poorly understood. Neural mass models (NMMs), a computational modelling framework capable of capturing complex neural dynamics across scales, can potentially be used to study the dynamical and network bases of these vital polysynaptic routing processes. In this study, we investigate polysynaptic signalling in three widely used NMMs, obeying Ornstein-Uhlenbeck, Stuart-Landau, and Jansen-Rit dynamics, by tracking the propagation of a discrete, focal, high-amplitude perturbation across the underlying network. We find that polysynaptic propagation emerges in all tested NMMs when configured within dynamical regimes that effectively enhance the persistence of perturbations. We also find distinct parameter domains that maximise signal propagation to directly connected regions and to those separated from the source by at least two hops. Finally, we benchmark in silico stimulus propagation in the brain network against an empirical dataset of direct electrical stimulation trials, to explore the relative capabilities of the NMMs in capturing signal propagation to connected versus unconnected regions. This analysis highlights the significance of dynamical repertoire in capturing stimulus propagation outcomes. Overall, this study provides insights into how dynamical and network features shape signal propagation over complex brain networks.

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Predictive pursuit emerges in high-dimensional recurrent neural networks

Redman, W. T.; Dinc, F. D.; Lin, X.; Chan, M. G.; Alexander, A. S.

2026-04-27 neuroscience 10.64898/2026.04.23.720457 medRxiv
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Tracking dynamic moving objects in the external world is ethologically important for many organisms. Recent experiments have examined neural dynamics supporting such behaviors by employing visually-guided pursuit in freely moving rodents, yet computational principles underlying this cognitive process are not well understood. To address this, we developed a recurrent neural network model for examining the predictive behaviors and computations that emerge during pursuit. We demonstrate that the model generates internal predictions of the targets future locations, with anticipatory behaviors increasing with exposure to stereotyped trajectories of the target. These internal predictions can be used by the model to pursue a target in a complex environment, and the models emergent strategy is aligned with behavior when tested in rodents. In investigating the computations that underlie the models ability to perform predictive pursuit, we found units sensitive to the position of the target relative to the artificial agent, a representation analogous to egocentric target neurons observed in animals performing pursuit tasks. Ablating these units significantly reduced model performance, establishing a causal role of this functional response type in efficient pursuit. Given the complexity of the task and agent behavior, we hypothesized that RNN models may use high-dimensional neural codes to support predictive pursuit. To test this, we trained models of varying rank and found that anticipatory behavior emerged only when the rank was sufficiently high, despite strong pursuit performance in lower rank models. All RNNs encoded the egocentric location of the target, whereas allocentric self and target locations emerged only in high-dimensional networks. Overall, our results suggest that, unlike commonly studied vision, motor, or memory tasks, predictive pursuit emerges in high-dimensional networks with sufficient resources.

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Stiefel Manifold Dynamical Systems for Tracking Representational Drift

Lee, H. D.; Jha, A.; Clarke, S. E.; Silvernagel, M. P.; Nuyujukian, P.; Linderman, S. W.

2026-03-10 neuroscience 10.64898/2026.03.07.710319 medRxiv
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Understanding neural dynamics is crucial for uncovering how the brain processes information and controls behavior. Linear dynamical systems (LDS) are widely used for modeling neural data due to their simplicity and effectiveness in capturing latent dynamics. However, LDS assumes a stable mapping from the latent states to neural activity, limiting its ability to capture representational drift--gradual changes in the brains representation of the external world. To address this, we introduce the Stiefel Manifold Dynamical System (SMDS), a new class of model designed to account for drift in neural representations across trials. In SMDS, emission matrices are constrained to be orthonormal and evolve smoothly over trials on the Stiefel manifold--the space of all orthonormal matrices--while the dynamics parameters are shared. This formulation allows SMDS to leverage data across trials while accounting for non-stationarity, thus capturing the underlying neural dynamics more accurately compared to an LDS. We apply SMDS to both simulated datasets and neural recordings across species. Our results consistently show that SMDS outperforms LDS in terms of log-likelihood and requires fewer latent dimensions to capture the same activity. Moreover, SMDS provides a powerful framework for quantifying and interpreting representational drift. It reveals a gradual drift over the course of minutes in the neural recordings and uncovers varying drift rates across dimensions, with slower drift in behaviorally and neurally significant dimensions.

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AI-Discovered Cognitive Models Reveal Novel Insights into Human and Animal Learning

Kasenberg, D.; Castro, P. S.; Eckstein, M. K.; Elteto, N.; Dabney, W.; Wang, C. L.; Engelcke, M.; Mohanta, R.; Dev, A.; Botvinick, M. M.; Tomasev, N.; Turner, G. C.; Costa, V. D.; Daw, N. D.; Stachenfeld, K. L.; Miller, K. J.

2026-05-21 animal behavior and cognition 10.64898/2026.05.18.725921 medRxiv
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Scientific models are widely used across the natural sciences as an interface between scientific theories and empirical data [1]. Such models play a key role, for example, in the study of human and animal learning, where they express algorithmic hypotheses and relate them to psychology and neuroscience data [2, 3]. These models are traditionally handcrafted by expert researchers based on existing theory or new insights. Such handcrafted models, however, are now known to fall short of capturing the full richness of behavior, even in their narrow domains [4-7]. An alternative data-driven approach has emerged, seeking to discover new insights by fitting and interpreting flexible models [8-11]. However, these tools require substantial human effort to derive insight from data, and it has been unclear how to discover new ideas from data efficiently. Here, we present DataDIVER, a general approach for automatically discovering computational models from data, and demonstrate that these models surface novel mechanistic insights into human and animal learning. Our approach delivers models that take the form of short computer programs, which are optimized both to fit data well and to be simple. These programs explicitly connect with existing theoretical frameworks and are readily understandable by human scientists. They can also be used to make novel predictions, some of which we show are borne out in re-analysis of existing data. General-purpose tools for surfacing new ideas from data, especially in combination with the large datasets that are increasingly available in many fields, stand to dramatically accelerate scientific discovery.

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Functionally convergent but parametrically distinct solutions: Robust degeneracy in a population of computational models of early-birth rat CA1 pyramidal neurons

Tomko, M.; Lupascu, C. A.; Filipova, A.; Jedlicka, P.; Lacinova, L.; Migliore, M.

2026-04-01 neuroscience 10.64898/2026.03.30.715207 medRxiv
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BackgroundFlexibility and robustness of neuronal function are closely linked to degeneracy, the ability of distinct structural or parametric configurations to produce similar functional outcomes. At the cellular level, this often manifests as ion-channel degeneracy, in which multiple combinations of intrinsic conductances yield comparable electrophysiological phenotypes. MethodologyWe used a population-based, data-driven modelling framework to generate large ensembles of biophysically detailed CA1 pyramidal neuron models constrained by somatic electrophysiological features extracted from patch-clamp recordings in acute slices from early-birth rats. 10 reconstructed morphologies were incorporated, and model populations were analyzed using parameter correlation analysis, principal component analysis, and generalization tests to assess robustness, degeneracy, and morphology dependence of intrinsic properties. ConclusionsAcross the model population, similar somatic firing behaviours emerged from widely different combinations of intrinsic parameters, demonstrating robust two-level ion channel degeneracy both within and across morphologies. Each morphology occupied a distinct region of parameter space, indicating morphology-specific compensatory effects, while weak pairwise parameter correlations suggested distributed compensation rather than tight parameter dependencies. Even with a fixed morphology, multiple parameter subspaces supported comparable electrophysiological phenotypes. Generalization across morphologies was structure-dependent and non-reciprocal, with successful parameter similarity occurring preferentially between structurally similar neurons. Interestingly, to accurately simulate spike-frequency adaptation, it was important to retain some kinetic properties of the ion channel models as free parameters during optimization. Together, these findings show that dendrite morphology shapes the valid parameter space, and similar electrophysiology of CA1 pyramidal neurons arises from the interplay between structural variability and ion-channel diversity. This work highlights the importance of population-based modelling for capturing biological variability and provides insights into how neuronal robustness might be maintained despite substantial heterogeneity, and offers a scalable pipeline for generating biophysically realistic CA1 neuron populations for use in network simulations. Author summaryNeurons must reliably process information even though their internal components, such as ion channels and cellular shape, can vary widely from cell to cell. How stable behaviour emerges from such variability is a fundamental question in neuroscience. In this study, we explored this problem using detailed computer models of early-birth rat hippocampal CA1 pyramidal neurons, a cell type that plays a central role in learning and memory. Instead of building a single "average" neuron model, we created large populations of models that all reproduced key experimental recordings but differed in their internal parameters. We found that neurons with different shapes and different combinations of ion channels could nevertheless generate similar electrical activity. This phenomenon, known as ion channel degeneracy, allows neurons to remain functional despite biological variability or perturbations. Our results show that neuronal shape strongly influences which parameter combinations are viable, but that multiple solutions exist even for the same morphology. The population of models we provide offers a resource for future studies of early-birth CA1 pyramidal cell function and dysfunction.

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Neural Population Models for EEG: From Canonical Models to Alternative Model Structures

Omejc, N.; Roman, S.; Todorovski, L.; Dzeroski, S.

2026-04-14 neuroscience 10.64898/2026.04.10.717643 medRxiv
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Neural population models are widely used to interpret electroencephalography (EEG), yet their relationships remain far less systematically understood than those among single-neuron models. More fundamentally, it remains unclear whether EEG can support a uniquely plausible population-level mechanism, or whether multiple structurally distinct models can explain the data equally well. To address this question, we combine comparative analysis of canonical model families with grammar-based generation of new candidate architectures. We assembled 17 canonical neural mass and phenomenological models and embedded them in a shared structural space. From their common processes, we defined a probabilistic grammar over interpretable dynamical components and developed ENEEGMA (Exploring Neural EEG Model Architectures), a Julia-based framework for grammar-based model generation, simulation, and parameter optimization, to generate additional candidate models. We then assessed both canonical and generated models by fitting them to EEG independent-component spectra from four datasets for each condition: resting state and steady-state visual evoked potentials. Canonical models formed six structural clusters. Across conditions, compact low-dimensional polynomial oscillators performed best overall, with Montbrio-Pazo-Roxin, FitzHugh-Nagumo, and Stuart-Landau models offering the best balance of fit quality, stability, and simplicity. Grammar-based exploration further showed that the space of viable EEG node models extends beyond canonical formulations: even a restricted search over 1,000 generated models produced compact alternatives competitive with nearly all canonical families and achieving the strongest cluster-level SSVEP fits. Together, these findings suggest that EEG spectra constrain plausible neural population mechanisms without uniquely determining them. Beyond this, grammar-based model exploration provides a principled, data-driven framework for EEG-constrained model discovery. Author summaryElectroencephalography (EEG) lets us measure brain activity non-invasively, but the signals are indirect, so we rely on mathematical models to explain how neural populations generate them. Many such models exist, yet it is unclear whether standard models cover the full range of plausible explanations for EEG data, or whether several very different models can explain the same signal equally well. In this study, we compared a broad set of established neural population models and then used a grammar-based equation discovery framework to automatically generate new candidate models from interpretable building blocks. We found that simple low-dimensional oscillator models often matched EEG spectra better than more complex canonical models. We also found that newly generated models could perform nearly as well as, and sometimes better than, established ones, especially for stimulus-driven responses. These results suggest that EEG spectra alone may not be enough to identify a unique underlying neural mechanism. More broadly, our work shows how automated, biologically informed model generation can help to compare, understand, expand, and test the space of candidate neural population models.

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A continuum of asynchronous states in cerebral cortex networks, and how they determine responsiveness

Bassat, M.; Tesler, F.; Destexhe, A.

2026-05-09 neuroscience 10.64898/2026.05.06.723408 medRxiv
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The awake brain is known to display asynchronous (AS) states during periods of attention and arousal, but the responsiveness properties of such states remain unclear. Here, we investigate this question using computational models of spiking networks of excitatory and inhibitory neurons, mimicking recurrently-connected networks in layer 2/3 of the cerebral cortex. The networks can generate a continuum of AS states, but with different responsiveness characteristics. By using a mean-field model to infer the dynamic properties of the system, we find that there are two families of AS states, which we call "underdamped" (UD) and "overdamped" (OD). Responsiveness is maximised at the transition between OD and UD states, which identifies a "working point" that may present advantageous computational properties.